get_dimred_plots_other_vars_subplan: Get a subplan for dimensionality reduction plots of selected...

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Get a subplan for dimensionality reduction plots of selected variables.

Description

Get a subplan for dimensionality reduction plots of selected variables.

Usage

get_dimred_plots_other_vars_subplan(
  sce_target_name,
  report_dimred_plots_other,
  report_dimred_names,
  dimred_plots_out_dir
)

Arguments

sce_target_name	A character scalar: name of target that stores SCE object, which will be used for plotting.
report_dimred_plots_other	A character vector: variables in ⁠colData(<sce_target_name>)⁠ to plot.
report_dimred_names	A character vector: dimred names for plotting ("pca", "tsne", "umap").
dimred_plots_out_dir	A character scalar: output directory to save PDFs into.

Value

drake::drake_plan()

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.