get_pca_gene_var_pcs: Get a number of PCs corresponding to biological variation.
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
get_pca_gene_var_pcs R Documentation
Get a number of PCs corresponding to biological variation.
Description
This strategy is further described in
OSCA.
Usage
get_pca_gene_var_pcs(
sce_pca,
BSPARAM = BiocSingular::IrlbaParam(),
BPPARAM = BiocParallel::SerialParam()
)
Arguments
sce_pca
A SingleCellExperiment object with calculated PCA.
BSPARAM
A BiocSingular::BiocSingularParam object.
BPPARAM
A BiocParallel::BiocParallelParam object.
Value
An integer scalar.
bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.
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| get_pca_gene_var_pcs | R Documentation |
Get a number of PCs corresponding to biological variation.
Description
This strategy is further described in OSCA.
Usage
get_pca_gene_var_pcs(
sce_pca,
BSPARAM = BiocSingular::IrlbaParam(),
BPPARAM = BiocParallel::SerialParam()
)
Arguments
sce_pca |
A |
BSPARAM |
A BiocSingular::BiocSingularParam object. |
BPPARAM |
A BiocParallel::BiocParallelParam object. |
Value
An integer scalar.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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