hvg_int_list_fn: Get a named list of HVG data (gene IDs, fit, metadata).

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Get a named list of HVG data (gene IDs, fit, metadata).

Description

Get a named list of HVG data (gene IDs, fit, metadata).

Usage

hvg_int_list_fn(
  sce_int_multibatchnorm,
  hvg_selection_value,
  hvg_combination = c("hvg_metric", "intersection", "union", "all"),
  hvg_selection = c("top", "significance", "threshold")
)

Arguments

sce_int_multibatchnorm	(input target) A SingleCellExperiment object processed by batchelor::multiBatchNorm().
hvg_selection_value, hvg_combination, hvg_selection	See sce_int_combine_hvgs().

Value

A named list. Output target: hvg_int_list

bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.