integration_methods_df_fn: Make a tibble with integration methods and their parameters.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Make a tibble with integration methods and their parameters.

Description

Make a tibble with integration methods and their parameters.

Usage

integration_methods_df_fn(integration_methods, hvg_int, hvg_int_with_cc = NULL)

Arguments

integration_methods	A named list of integration methods. See the INTEGRATION_METHODS parameter in ⁠01_integration.yaml⁠ config for more details.
hvg_int	(input target) A named list of HVG data for each SingleCellExperiment object. Depending on settings, it may have CC-related HVGs removed.
hvg_int_with_cc	(input target) NULL or a named list of HVG data for each SingleCellExperiment object. Depending on settings, it may have all genes (including CC-related) included.

Value

A tibble. Output target: integration_methods_df

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.