markers_table_files: Prepare a table with markers and render a HTML report from...

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Prepare a table with markers and render a HTML report from RMarkdown template.

Description

Prepare a table with markers and render a HTML report from RMarkdown template.

Usage

markers_table_files(
  markers_for_tables,
  rmd_template,
  marker_type = c("global", "contrast"),
  drake_cache_dir = ".drake"
)

Arguments

markers_for_tables	A tibble. File paths in column out_file will be used to save rendered HTML files. See cluster_markers_for_tables or contrasts_for_tables target for details.
rmd_template	A character scalar: path to RMarkdown file.
marker_type	A character scalar.
drake_cache_dir	A character scalar: path to drake cache directory.

Value

A character vector: markers_for_tables$out_file.

bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.