plot_vln: Make a combined violin-boxplot plot.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Make a combined violin-boxplot plot.

Description

Make a combined violin-boxplot plot.

Usage

plot_vln(
  sce,
  ensembl_id,
  groups,
  add_jitter = TRUE,
  jitter_color = TRUE,
  jitter_point_size = 0.5,
  violin_scale = "area",
  boxplot_width = 0.1,
  labs = NULL
)

Arguments

sce	A SingleCellExperiment object.
ensembl_id	A character scalar: ENSEMBL ID of feature to plot.
groups	A character scalar: name of a column in colData(sce) by which to divide cells. Violin plot will be created for each level.
add_jitter	A logical scalar: if TRUE, add jitter to points.
jitter_color	A logical scalar: if TRUE, jittered points will be colored by groups.
jitter_point_size	A numeric scalar.
violin_scale	A character scalar: passed to ggplot2::geom_violin() (scale parameter).
boxplot_width	A numeric scalar: passed to ggplot2::geom_boxplot() (width parameter).
labs	A ggplot2::labs() object.

Value

A ggplot2 object.

bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.