sce_cc_fn: Assign cell cycle phase to cells.
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
View source: R/single_sample_norm_clustering.R
sce_cc_fn R Documentation
Assign cell cycle phase to cells.
Description
This is a wrapper around Seurat::CellCycleScoring().
Usage
sce_cc_fn(sce_final_input_qc, cc_genes, data = NULL)
Arguments
sce_final_input_qc
(input target) A SingleCellExperiment object.
cc_genes
(input target) A dataframe.
data
Passed to Seurat::as.Seurat().
Value
A modified sce_final_input_qc objects with columns appended to colData():
phase, s_score, g2m_score, cc_difference. Output target: sce_cc
bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.
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View source: R/single_sample_norm_clustering.R
| sce_cc_fn | R Documentation |
Assign cell cycle phase to cells.
Description
This is a wrapper around Seurat::CellCycleScoring().
Usage
sce_cc_fn(sce_final_input_qc, cc_genes, data = NULL)
Arguments
sce_final_input_qc |
(input target) A |
cc_genes |
(input target) A dataframe. |
data |
Passed to |
Value
A modified sce_final_input_qc objects with columns appended to colData():
phase, s_score, g2m_score, cc_difference. Output target: sce_cc
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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