sce_history_fn: Create a tibble with history of cell and gene filtering.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Create a tibble with history of cell and gene filtering.

Description

Create a tibble with history of cell and gene filtering.

Usage

sce_history_fn(
  sce_unfiltered,
  sce_qc_filter_genes,
  sce_custom_filter_genes,
  spatial = FALSE
)

Arguments

sce_unfiltered	(input target) A SingleCellExperiment object.
sce_qc_filter_genes	(input target) A SingleCellExperiment object.
sce_custom_filter_genes	(input target) A SingleCellExperiment object.
spatial	A logical vector: TRUE for spatial transcriptomics dataset.

Value

A tibble. Output target: sce_history

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.