sce_selected_fn: Select a 'SingleCellExperiment' object which will proceed to...

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Select a SingleCellExperiment object which will proceed to the ⁠02_norm_clustering⁠ stage.

Description

Select a SingleCellExperiment object which will proceed to the ⁠02_norm_clustering⁠ stage.

Usage

sce_selected_fn(
  sce_qc_filter_genes,
  sce_custom_filter_genes,
  save_dataset_sensitive_filtering
)

Arguments

sce_qc_filter_genes	(input target) A SingleCellExperiment object.
sce_custom_filter_genes	(input target) A SingleCellExperiment object.
save_dataset_sensitive_filtering	A logical scalar: if TRUE, return sce_qc_filter_genes target, otherwise sce_custom_filter_genes target (both are SingleCellExperiment objects).

Value

See the save_dataset_sensitive_filtering argument. Output target: sce_selected

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.