Man pages for biomarble/PlantNGSTools
NGS bioinformatics tools for plants
| DEGAnalysis_DESeq2 | DEG analysis using samples with replicates. |
| DEGAnalysis_EBSeq | DEG analysis using samples without replicates. |
| getAllChildren | get All Children . |
| GOBar | GO barplot . |
| GObubble | GO enrichment bubble plot |
| GOdbInfo | GOdbInfo. |
| GOEnrich | GO enrichment . |
| GOenrich_common | GO enrichment using annotation. |
| GOEnrich_customMapping | GO enrichment using custom mapping file. |
| GOEnrich_customTable | GO enrichment using custom table annotation. |
| GOEnrich_eggnog | GO enrichment using eggnog Mapper annotation. |
| GOEnrich_pannzer2 | GO enrichment using pannzer2 result. |
| GOenrichsub | GO enrichment sub. |
| KAAS2Keggdb | convert KEGG kaas annotation to keggdb addon. |
| KEGGbubble | KEGG enrichment bubble plot. |
| KEGGdbInfo | KEGGdbInfo. |
| KEGGenrich | KEGG pathway enrichment tools. |
| KEGGenrich_blastkoala | KEGG pathway enrichment tools for blastkoala ko annotation. |
| KEGGenrich_common | KEGG pathway enrichment tools commmon. |
| KEGGenrich_customTable | KEGG pathway enrichment tools using custom annotation file. |
| MAPlot | MA plot for DEG analysis results. |
| matrixGroup | merge column values according group information. |
| multiTraitPlot | trait Plot. |
| multiTraitStat | Frequently used stats for trait analysis. |
| PANNZERres2GOdb | convert PANNZER GO annotation to godb addon. |
| VolcanoPlot | Volcano plot for DEG analysis results. |
