KEGGenrich_customTable: KEGG pathway enrichment tools using custom annotation file.
In biomarble/PlantNGSTools: NGS bioinformatics tools for plants
KEGGenrich_customTable R Documentation
KEGG pathway enrichment tools using custom annotation file.
Description
do KEGG pathway enrichment by a list of degs using custom annotation file.
Usage
KEGGenrich_customTable(
deglist,
tableFile,
outdir = NULL,
outprefix,
useFDR = FALSE
)
Arguments
deglist
DEG vector
tableFile
custom kegg to map file
outdir
output directory
outprefix
output file prefix
useFDR
whether to add FDR column
biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.
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| KEGGenrich_customTable | R Documentation |
KEGG pathway enrichment tools using custom annotation file.
Description
do KEGG pathway enrichment by a list of degs using custom annotation file.
Usage
KEGGenrich_customTable(
deglist,
tableFile,
outdir = NULL,
outprefix,
useFDR = FALSE
)
Arguments
deglist |
DEG vector |
tableFile |
custom kegg to map file |
outdir |
output directory |
outprefix |
output file prefix |
useFDR |
whether to add FDR column |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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