KEGGbubble: KEGG enrichment bubble plot.

In biomarble/PlantNGSTools: NGS bioinformatics tools for plants

KEGG enrichment bubble plot.

Description

do KEGG pathway enrichment bubble plot using KEGGenrich result.

Usage

KEGGbubble(
  dataset,
  MainTitle = "",
  TrimName = F,
  NameWidth = 50,
  top = 10,
  ColorScheme = "rw",
  ColorReverse = F,
  xangle = 45
)

Arguments

dataset	a dataframe of KEGG Enrichment output, with these columns:'ID', 'KEGGPathway', 'Count', 'all', 'P'
MainTitle	main title
top	top n kegg pathways used to plot
ColorScheme	"ryb", 'rwb', 'ryg', 'rwg', 'rw', 'bw', 'gw'
ColorReverse	whether to reverse color order
xangle	angle of x axis text

biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.