GOEnrich: GO enrichment .
In biomarble/PlantNGSTools: NGS bioinformatics tools for plants
GOEnrich R Documentation
GO enrichment .
Description
do GO enrichment by a list of DEGs.
Usage
GOEnrich(deglist, taxon, useFDR = FALSE, cut = 0.05, outdir = NULL, outprefix)
Arguments
deglist
DEG vector
taxon
taxon id , use GOdbInfo() to check available ids
useFDR
whether to use FDR
cut
significant pvalue threshold, if useFDR is set, use FDR instead
outdir
output directory
outprefix
output file prefix
biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.
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| GOEnrich | R Documentation |
GO enrichment .
Description
do GO enrichment by a list of DEGs.
Usage
GOEnrich(deglist, taxon, useFDR = FALSE, cut = 0.05, outdir = NULL, outprefix)
Arguments
deglist |
DEG vector |
taxon |
taxon id , use GOdbInfo() to check available ids |
useFDR |
whether to use FDR |
cut |
significant pvalue threshold, if useFDR is set, use FDR instead |
outdir |
output directory |
outprefix |
output file prefix |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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