GOEnrich_eggnog: GO enrichment using eggnog Mapper annotation.

In biomarble/PlantNGSTools: NGS bioinformatics tools for plants

GO enrichment using eggnog Mapper annotation.

Description

do GO enrichment by a list of DEGs using eggnog Mapper annotation.

Usage

GOEnrich_eggnog(
  deglist,
  eggnogFile,
  useFDR = FALSE,
  cut = 0.05,
  outdir = NULL,
  outprefix = NULL
)

Arguments

deglist	DEG vector
eggnogFile	custom annotation file using eggNOG database
useFDR	whether to use FDR
cut	significant pvalue threshold, if useFDR is set, use FDR instead
outdir	output directory
outprefix	output file prefix

biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.