MAPlot: MA plot for DEG analysis results.

In biomarble/PlantNGSTools: NGS bioinformatics tools for plants

MA plot for DEG analysis results.

Description

do MA plot.

Usage

MAPlot(
  dat,
  useFDR = T,
  MainTitle = "",
  cut = 0.05,
  FCcut = 2,
  ylim = 10,
  showlabel = "no",
  showlabel.num = 10,
  point.size = 2
)

Arguments

dat	deg analysis result dataframe with ID,FCcut,log2FoldChange,Pvalue or FDR
useFDR	whether to use FDR to define significance
MainTitle	main title of plot
cut	P value significant cut , if useFDR is set, FDR is used
FCcut	FoldChange cut significant cut
ylim	y axis limits
showlabel	whether to show top significant gene names
showlabel.num	top number
point.size	point size

biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.