DEGAnalysis_EBSeq: DEG analysis using samples without replicates.
In biomarble/PlantNGSTools: NGS bioinformatics tools for plants
DEGAnalysis_EBSeq R Documentation
DEG analysis using samples without replicates.
Description
do DEG analysis using samples without replicates by EBSeq.
Usage
DEGAnalysis_EBSeq(
countMatrix,
cut = 0.05,
FCcut = 2,
outdir = NULL,
control = "Manually_select",
treat = "Manually_select"
)
Arguments
countMatrix
input count matrix, rows are genes and columns are samples
cut
significant threshold of FDR
FCcut
Fold Change threshold
outdir
output file directory
control
control sample name, used as denominator in Fold Change calculation
treat
treat sample name, used as numerator in Fold Change calculation
biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| DEGAnalysis_EBSeq | R Documentation |
DEG analysis using samples without replicates.
Description
do DEG analysis using samples without replicates by EBSeq.
Usage
DEGAnalysis_EBSeq(
countMatrix,
cut = 0.05,
FCcut = 2,
outdir = NULL,
control = "Manually_select",
treat = "Manually_select"
)
Arguments
countMatrix |
input count matrix, rows are genes and columns are samples |
cut |
significant threshold of FDR |
FCcut |
Fold Change threshold |
outdir |
output file directory |
control |
control sample name, used as denominator in Fold Change calculation |
treat |
treat sample name, used as numerator in Fold Change calculation |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.