GOEnrich_customTable: GO enrichment using custom table annotation.

In biomarble/PlantNGSTools: NGS bioinformatics tools for plants

GO enrichment using custom table annotation.

Description

do GO enrichment by a list of DEGs using custom table annotation.

Usage

GOEnrich_customTable(
  deglist,
  tableFile,
  useFDR = FALSE,
  cut = 0.05,
  outdir = NULL,
  outprefix = NULL
)

Arguments

deglist	DEG vector
tableFile	path of the custom GO annotation file, which annotates two-column pairwise gene-GO per row
useFDR	whether to use FDR
cut	significant pvalue threshold, if useFDR is set, use FDR instead
outdir	output directory
outprefix	output file prefix

biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.