GOEnrich_customMapping: GO enrichment using custom mapping file.

In biomarble/PlantNGSTools: NGS bioinformatics tools for plants

GO enrichment using custom mapping file.

Description

do GO enrichment by a list of DEGs using custom mapping file.

Usage

GOEnrich_customMapping(
  deglist,
  mappingfile,
  useFDR = FALSE,
  cut = 0.05,
  outdir = NULL,
  outprefix = NULL
)

Arguments

deglist	DEG vector
mappingfile	path of the custom GO annotation file, which annotates each gene in a row, separate GOs with comma(,)
useFDR	whether to use FDR
cut	significant pvalue threshold, if useFDR is set, use FDR instead
outdir	output directory
outprefix	output file prefix

biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.