GOEnrich_pannzer2: GO enrichment using pannzer2 result.
In biomarble/PlantNGSTools: NGS bioinformatics tools for plants
GOEnrich_pannzer2 R Documentation
GO enrichment using pannzer2 result.
Description
do GO enrichment by a list of DEGs using pannzer2 result.
Usage
GOEnrich_pannzer2(
deglist,
pannzerfile,
useFDR = FALSE,
cut = 0.05,
outdir = NULL,
outprefix = NULL
)
Arguments
deglist
DEG vector
pannzerfile
custom annotation file using pannzer2 database
useFDR
whether to use FDR
cut
significant pvalue threshold, if useFDR is set, use FDR instead
outdir
output directory
outprefix
output file prefix
biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.
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| GOEnrich_pannzer2 | R Documentation |
GO enrichment using pannzer2 result.
Description
do GO enrichment by a list of DEGs using pannzer2 result.
Usage
GOEnrich_pannzer2(
deglist,
pannzerfile,
useFDR = FALSE,
cut = 0.05,
outdir = NULL,
outprefix = NULL
)
Arguments
deglist |
DEG vector |
pannzerfile |
custom annotation file using pannzer2 database |
useFDR |
whether to use FDR |
cut |
significant pvalue threshold, if useFDR is set, use FDR instead |
outdir |
output directory |
outprefix |
output file prefix |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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