GOBar: GO barplot .

In biomarble/PlantNGSTools: NGS bioinformatics tools for plants

GO barplot .

Description

Barplot of secondary GO terms.

Usage

GOBar(
  deglist,
  taxonid = NULL,
  customMapping = NULL,
  eggnog = NULL,
  pannzer2 = NULL,
  customTable = NULL
)

Arguments

deglist	DEG name vector
taxonid	taxon id , use GOdbInfo() to check available ids
customMapping	path of the custom GO annotation file, which annotates each gene in a row, separate GOs with comma(,)
eggnog	path of the custom GO annotation using eggNOG database
pannzer2	path of the custom GO annotation using pannzer2 database
customTable	path of the custom GO annotation file, which annotates two-column pairwise gene-GO per row

biomarble/PlantNGSTools documentation built on Feb. 8, 2024, 2:46 a.m.