import_MSqRob: Import MaxQuant LF data

In biospi/deamass: Statistical modelling for mass spectrometry omics

Import MaxQuant LF data

Description

Reads in MaxQuant evidence.txt and proteinGroups.txt.

Usage

import_MSqRob(
  fData,
  exprs,
  evidence.file = NULL,
  is.log2 = TRUE,
  evidence.data = NULL
)

Arguments

evidence.file	Location of the evidence.txt file.
proteinGroups.file	Location of the proteinGroups.txt file.
shared	Include shared peptides?
data	Advanced: Rather than specifying file, you can enter a data.frame preloaded with fread default parameters.

Value

A data.frame for input into bayesprot.

biospi/deamass documentation built on May 20, 2023, 3:30 a.m.