import_MaxQuant_peptides: Import MaxQuant LF data

In biospi/deamass: Statistical modelling for mass spectrometry omics

Description

Reads in MaxQuant peptides.txt and proteinGroups.txt.

Usage

import_MaxQuant_peptides(
  proteinGroups.file = NULL,
  peptides.file = NULL,
  shared = FALSE,
  proteinGroups.data = NULL,
  peptides.data = NULL,
  as.data.table = F
)

Arguments

proteinGroups.file	Location of the proteinGroups.txt file.
peptides.file	Location of the peptides.txt file.
shared	Include shared peptides?
data	Advanced: Rather than specifying file, you can enter a data.frame preloaded with fread default parameters.

Value

A data.frame for input into bayesprot.

biospi/deamass documentation built on Nov. 25, 2021, 1:18 p.m.