import_ProteomeDiscoverer: Import Thermo ProteomeDiscoverer data

Description Usage Arguments Value

View source: R/import.R

Description

Reads in a Thermo ProteomeDiscoverer PSMs.txt file.

Usage

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import_ProteomeDiscoverer(
  file = NULL,
  use.shared.peptides = FALSE,
  use.not.unique = TRUE,
  use.excluded.by.method = TRUE,
  use.redundant = FALSE,
  data = NULL,
  as.data.table = F
)

Arguments

file

Location of the PSMs.txt file.

data

Advanced: Rather than specifying file, you can enter a data.frame preloaded with fread default parameters.

shared

Include shared peptides?

used

Include only measurements marked as used by ProteomeDiscoverer?

Value

A data.frame for input into seaMass_sigma.


biospi/deamass documentation built on Nov. 25, 2021, 1:18 p.m.