Files in biospi/deamass
Statistical modelling for mass spectrometry omics
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/delta_control.R
R/delta_dea.R
R/delta_fdr.R
R/delta_plots.R
R/delta_process.R
R/design.R
R/dist.R
R/emmeans.R
R/generics.R
R/import.R
R/performance.R
R/report.R
R/schedule.R
R/seaMass.R
R/seaMass_delta.R
R/seaMass_sigma.R
R/seaMass_theta.R
R/sigma_block.R
R/sigma_control.R
R/sigma_model.R
R/sigma_plots.R
R/sigma_process0.R
R/sigma_process1.R
R/stat_ylfdr.R
R/theta_block.R
R/theta_control.R
R/theta_normalise.R
R/theta_plots.R
R/theta_process.R
R/theta_standardise.R
R/utils.R
README.md
inst/PeptideSummary.txt.bz2
inst/evidence.txt.bz2
inst/proteinGroups.txt.bz2
man/assemble_report-seaMass_sigma-method.Rd
man/delta_control-class.Rd
man/dinaka.Rd
man/dist_inaka.Rd
man/dist_lst.Rd
man/dist_normal.Rd
man/dist_normal_robust.Rd
man/dist_samples_inaka.Rd
man/dist_samples_lst.Rd
man/dist_samples_lst_ash.Rd
man/dist_samples_normal.Rd
man/dist_samples_robust_normal.Rd
man/dist_sf_with_fixed_df1_fitdistrplus.Rd
man/dlst.Rd
man/generate_markdown-seaMass-method.Rd
man/import_DIANN.Rd
man/import_MSqRob.Rd
man/import_MSstats.Rd
man/import_MaxQuant.Rd
man/import_MaxQuant_evidence0.Rd
man/import_MaxQuant_peptides.Rd
man/import_OpenSWATH.Rd
man/import_Progenesis.Rd
man/import_ProteinPilot.Rd
man/import_ProteomeDiscoverer.Rd
man/lingofy-seaMass-method.Rd
man/new_assay_design.Rd
man/pinaka.Rd
man/plot_assay_stdevs-seaMass_sigma-method.Rd
man/plot_assay_stdevs-sigma_block-method.Rd
man/plot_fdr-seaMass_delta-method.Rd
man/plot_pr-seaMass_delta-method.Rd
man/plot_robust_pca-seaMass-method.Rd
man/plot_volcano-seaMass_delta-method.Rd
man/plst.Rd
man/qinaka.Rd
man/qlst.Rd
man/render_markdown-seaMass-method.Rd
man/rhat.Rd
man/robust_pca-seaMass-method.Rd
man/runs.Rd
man/schedule_local-class.Rd
man/schedule_pbs-class.Rd
man/schedule_sge-class.Rd
man/schedule_slurm-class.Rd
man/seaMass-class.Rd
man/seaMass_delta-class.Rd
man/seaMass_group_quants-class.Rd
man/seaMass_sigma-class.Rd
man/seaMass_theta-class.Rd
man/sigma_block-class.Rd
man/sigma_control-class.Rd
man/squeeze_stdev.Rd
man/squeeze_stdev_limma.Rd
man/theta_block-class.Rd
man/theta_control-class.Rd
seaMass.Rproj
