import_MaxQuant_evidence0: Import MaxQuant LF data
In biospi/deamass: Statistical modelling for mass spectrometry omics
Description
Usage
Arguments
Value
Description
Reads in MaxQuant evidence.txt and proteinGroups.txt.
Usage
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import_MaxQuant_evidence0(
proteinGroups.file = NULL,
evidence.file = NULL,
shared = F,
rollup = "measurement",
proteinGroups.data = NULL,
evidence.data = NULL,
as.data.table = F
)
Arguments
proteinGroups.file
Location of the proteinGroups.txt file.
evidence.file
Location of the evidence.txt file.
shared
Include shared peptides?
data
Advanced: Rather than specifying file, you can enter a data.frame preloaded with
fread default parameters.
Value
A data.frame for input into bayesprot.
biospi/deamass documentation built on Nov. 25, 2021, 1:18 p.m.
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Description Usage Arguments Value
Description
Reads in MaxQuant evidence.txt and proteinGroups.txt.
Usage
1 2 3 4 5 6 7 8 9 | import_MaxQuant_evidence0(
proteinGroups.file = NULL,
evidence.file = NULL,
shared = F,
rollup = "measurement",
proteinGroups.data = NULL,
evidence.data = NULL,
as.data.table = F
)
|
Arguments
proteinGroups.file |
Location of the |
evidence.file |
Location of the |
shared |
Include shared peptides? |
data |
Advanced: Rather than specifying |
Value
A data.frame for input into bayesprot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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