API for biospi/deamass
Statistical modelling for mass spectrometry omics

Global functions
.onAttach Source code
assay_components,seaMass_sigma-method Man page
assay_components,sigma_block-method Man page
assay_design,seaMass_delta-method Man page
assay_design,seaMass_sigma-method Man page
assay_design,seaMass_theta-method Man page
assay_design,sigma_block-method Man page
assay_design,theta_block-method Man page
assay_deviations,seaMass_sigma-method Man page
assay_deviations,sigma_block-method Man page
assay_groups,seaMass_sigma-method Man page
assay_groups,sigma_block-method Man page
assay_means,seaMass_theta-method Man page
assay_means,theta_block-method Man page
assay_stdevs,seaMass_sigma-method Man page
assay_stdevs,sigma_block-method Man page
assemble_report,seaMass_sigma-method Man page
batch_split Source code
blocks,seaMass_sigma-method Man page
blocks,sigma_block-method Man page
blocks,theta_block-method Man page
component_deviations,seaMass_sigma-method Man page
component_deviations,sigma_block-method Man page
component_deviations_de,seaMass_delta-method Man page
component_deviations_fdr,seaMass_delta-method Man page
component_means,seaMass_sigma-method Man page
component_means,sigma_block-method Man page
component_stdevs,seaMass_sigma-method Man page
component_stdevs,sigma_block-method Man page
components,seaMass_sigma-method Man page
components,sigma_block-method Man page
container,sigma_block-method Man page
container,theta_block-method Man page
control,seaMass_delta-method Man page
control,seaMass_sigma-method Man page
control,seaMass_theta-method Man page
control,sigma_block-method Man page
control,theta_block-method Man page
data.frame Source code
data_frame Source code
del,seaMass_delta-method Man page
del,seaMass_sigma-method Man page
del,seaMass_theta-method Man page
delta_control Man page Source code
delta_control-class Man page
df_col Source code
df_rows Source code
dinaka Man page Source code
dist_inaka Man page Source code
dist_lst Man page Source code
dist_normal Man page Source code
dist_normal_robust Man page Source code
dist_samples_inaka Man page Source code
dist_samples_lst Man page Source code
dist_samples_lst_ash Man page Source code
dist_samples_normal Man page Source code
dist_samples_robust_normal Man page Source code
dist_sf_with_fixed_df1_fitdistrplus Man page Source code
dlst Man page Source code
emm_basis.MCMCglmm_seaMass Source code
filepath,seaMass_delta-method Man page
filepath,seaMass_sigma-method Man page
filepath,seaMass_theta-method Man page
filepath,sigma_block-method Man page
filepath,theta_block-method Man page
generate_markdown,seaMass-method Man page
group_means,seaMass_sigma-method Man page
group_means,sigma_block-method Man page
group_quants,seaMass_sigma-method Man page
group_quants,seaMass_theta-method Man page
group_quants,sigma_block-method Man page
group_quants,theta_block-method Man page
group_quants_de,seaMass_delta-method Man page
group_quants_fdr,seaMass_delta-method Man page
group_standards,seaMass_theta-method Man page
group_standards,theta_block-method Man page
groups,seaMass_sigma-method Man page
groups,sigma_block-method Man page
hpc_delta Source code
hpc_plots Source code
hpc_report Source code
hpc_sigma_process0 Source code
hpc_sigma_process1 Source code
hpc_theta Source code
import_DIANN Man page
import_MSqRob Man page
import_MSstats Man page
import_MaxQuant Man page
import_MaxQuant_evidence0 Man page
import_MaxQuant_peptides Man page
import_OpenSWATH Man page
import_Progenesis Man page
import_ProteinPilot Man page
import_ProteomeDiscoverer Man page Source code
increment_completed Source code
lingofy,seaMass-method Man page
mat_2_df Source code
measurement_means,seaMass_sigma-method Man page
measurement_means,sigma_block-method Man page
measurement_stdevs,seaMass_sigma-method Man page
measurement_stdevs,sigma_block-method Man page
measurements,seaMass_sigma-method Man page
measurements,sigma_block-method Man page
modifyList Source code
modify_list Source code
name,seaMass_delta-method Man page
name,seaMass_sigma-method Man page
name,seaMass_theta-method Man page
name,sigma_block-method Man page
name,theta_block-method Man page
new_assay_design Man page
new_data_frame Source code
open_deltas,seaMass_sigma-method Man page
open_sigma Man page
open_thetas,seaMass_sigma-method Man page
parallel_lapply Source code
parent,seaMass_delta-method Man page
parent,seaMass_theta-method Man page
parent,theta_block-method Man page
pinaka Man page Source code
plot_assay_stdevs,seaMass_sigma-method Man page
plot_fdr,seaMass_delta-method Man page
plot_pr,seaMass_delta-method Man page
plot_robust_pca,seaMass-method Man page
plot_volcano,seaMass_delta-method Man page
plst Man page Source code
priors,seaMass_sigma-method Man page
priors,sigma_block-method Man page
qinaka Man page Source code
qlst Man page Source code
rbindlists Source code
read_completed Source code
recover_data.MCMCglmm_seaMass Source code
render_markdown,seaMass-method Man page
rhat Man page Source code
rinaka Source code
rlst Source code
robust_pca,seaMass-method Man page
root,seaMass_delta-method Man page
root,seaMass_sigma-method Man page
root,seaMass_theta-method Man page
root,sigma_block-method Man page
root,theta_block-method Man page
run,seaMass_delta-method Man page
run,seaMass_sigma-method Man page
run,seaMass_theta-method Man page
runs Man page Source code
runs<- Man page
schedule_local Man page
schedule_local-class Man page
schedule_pbs Man page Source code
schedule_pbs-class Man page
schedule_sge Man page Source code
schedule_sge-class Man page
schedule_slurm Man page Source code
schedule_slurm-class Man page
seaMass-class Man page
seaMass_delta Man page Source code
seaMass_delta-class Man page
seaMass_group_quants-class Man page
seaMass_sigma Man page Source code
seaMass_sigma-class Man page
seaMass_theta Man page Source code
seaMass_theta-class Man page
sigma_block Man page
sigma_block-class Man page
sigma_control Man page Source code
sigma_control-class Man page
split_matrix Source code
squeeze_stdev Man page Source code
squeeze_stdev_limma Man page Source code
stat_ylfdr Source code
stop_parallel Source code
summary,sigma_block-method Man page
theta_block Man page
theta_block-class Man page
theta_control Man page Source code
theta_control-class Man page
timings,seaMass_sigma-method Man page
timings,sigma_block-method Man page
top_groups,seaMass_sigma-method Man page
truth_Navarro_spikein Man page
truth_seaMass_spikein Man page
biospi/deamass documentation built on Nov. 25, 2021, 1:18 p.m.