API for biospi/deamass
Statistical modelling for mass spectrometry omics

Global functions
.onAttach Source code
add_Navarro_spikein_truth Man page
add_seaMass_spikein_truth Man page
assay_components,seaMass_sigma-method Man page
assay_design,seaMass_delta-method Man page
assay_design,seaMass_sigma-method Man page
assay_design,sigma_block-method Man page
assay_deviations,seaMass_sigma-method Man page
assay_deviations,sigma_block-method Man page
assay_exposures,sigma_block-method Man page
assay_groups,seaMass_sigma-method Man page
assay_variances,seaMass_sigma-method Man page
assay_variances,sigma_block-method Man page
batch_split Source code
blocks,seaMass_sigma-method Man page
blocks,sigma_block-method Man page
calc_bw Source code
completed,seaMass_sigma-method Man page
component_deviations,seaMass_delta-method Man page
component_deviations,seaMass_sigma-method Man page
component_deviations,sigma_block-method Man page
component_deviations_fdr,seaMass_delta-method Man page
component_variances,seaMass_sigma-method Man page
component_variances,sigma_block-method Man page
components,seaMass_sigma-method Man page
components,sigma_block-method Man page
compute_density Source code
control,seaMass_delta-method Man page
control,seaMass_sigma-method Man page
control,sigma_block-method Man page
del,seaMass_delta-method Man page
del,seaMass_sigma-method Man page
delta_control Man page Source code
delta_control-class Man page
dist_invchisq Man page Source code
dist_lst Man page Source code
dist_normal Man page Source code
dist_normal_robust Man page Source code
dist_samples_invchisq Man page Source code
dist_samples_lst Man page Source code
dist_samples_lst_ash Man page Source code
dist_samples_normal Man page Source code
dist_samples_robust_normal Man page Source code
dist_sf_with_fixed_df1_fitdistrplus Man page Source code
filepath,seaMass_delta-method Man page
filepath,seaMass_sigma-method Man page
filepath,sigma_block-method Man page
groups,seaMass_sigma-method Man page
groups,sigma_block-method Man page
hpc_delta Source code
hpc_finish Source code
hpc_plots Source code
hpc_process0 Source code
hpc_process1 Source code
import_DIANN Man page
import_MSqRob Man page
import_MSstats Man page
import_MaxQuant Man page
import_MaxQuant_evidence0 Man page
import_MaxQuant_peptides Man page
import_OpenSWATH Man page
import_Progenesis Man page
import_ProteinPilot Man page
import_ProteomeDiscoverer Man page Source code
measurement_variances,seaMass_sigma-method Man page
measurement_variances,sigma_block-method Man page
measurements,seaMass_sigma-method Man page
measurements,sigma_block-method Man page
name,seaMass_delta-method Man page
name,seaMass_sigma-method Man page
name,sigma_block-method Man page
new_assay_design Man page
new_data_frame Source code
normalised_group_quants,seaMass_delta-method Man page
normalised_group_quants,seaMass_sigma-method Man page
normalised_group_quants,sigma_block-method Man page
normalised_group_quants_fdr,seaMass_delta-method Man page
normalised_group_variances,seaMass_sigma-method Man page
normalised_group_variances,sigma_block-method Man page
open_delta Man page
open_deltas,seaMass_sigma-method Man page
open_sigma Man page
parallel_lapply Source code
parent,sigma_block-method Man page
plot_assay_exposures,seaMass_delta-method Man page
plot_fdr Man page
plot_fits Man page
plot_pca,seaMass-method Man page
plot_pca_contours,seaMass-method Man page
plot_pr Man page
plot_priors Man page
plot_volcano Man page Source code
priors,sigma_block-method Man page
raw_group_quants,seaMass_sigma-method Man page
raw_group_quants,sigma_block-method Man page
rbindlists Source code
rhat Man page Source code
run,seaMass_delta-method Man page
run,seaMass_sigma-method Man page
runs Man page Source code
runs<- Man page
schedule_local Man page
schedule_local-class Man page
schedule_pbs Man page Source code
schedule_pbs-class Man page
schedule_sge Man page Source code
schedule_sge-class Man page
schedule_slurm Man page Source code
schedule_slurm-class Man page
seaMass-class Man page
seaMass_delta Man page Source code
seaMass_delta-class Man page
seaMass_sigma Man page Source code
seaMass_sigma-class Man page
sigma_block Man page
sigma_block-class Man page
sigma_control Man page Source code
sigma_control-class Man page
squeeze_var Man page Source code
squeeze_var_limma Man page Source code
standardised_group_quants,seaMass_delta-method Man page
standardised_group_quants,seaMass_sigma-method Man page
standardised_group_quants,sigma_block-method Man page
standardised_group_quants_fdr,seaMass_delta-method Man page
stat_logydensity Source code
stop_parallel Source code
summary,sigma_block-method Man page
timings,seaMass_sigma-method Man page
timings,sigma_block-method Man page
to_lower_ascii Source code
biospi/deamass documentation built on June 15, 2020, 8:27 p.m.