theta_block-class: seaMass-theta block

In biospi/deamass: Statistical modelling for mass spectrometry omics

seaMass-theta block

Description

The results, returned by /linkseaMass_theta /codeblocks() function

Usage

## S4 method for signature 'theta_block'
filepath(object)

## S4 method for signature 'theta_block'
name(object)

## S4 method for signature 'theta_block'
parent(object)

## S4 method for signature 'theta_block'
root(object)

## S4 method for signature 'theta_block'
container(object)

## S4 method for signature 'theta_block'
control(object)

## S4 method for signature 'theta_block'
assay_design(object, as.data.table = FALSE)

## S4 method for signature 'theta_block'
assay_means(
  object,
  assays = NULL,
  summary = TRUE,
  input = "model1",
  chains = 1:control(object)@nchain,
  as.data.table = FALSE
)

## S4 method for signature 'theta_block'
group_standards(
  object,
  groups = NULL,
  summary = TRUE,
  input = "model1",
  chains = 1:control(object)@nchain,
  as.data.table = FALSE
)

## S4 method for signature 'theta_block'
group_quants(
  object,
  groups = NULL,
  summary = TRUE,
  input = "model1",
  chains = 1:control(object)@nchain,
  as.data.table = FALSE
)

Methods (by generic)

• filepath: Get the path.

• name: Get the block name.

• parent: Get the seaMass_theta object for this block.

• root: Get the seaMass_sigma object.

• container: Get the seaMass_theta object for this block.

• control: Get the theta_control object for this block.

• assay_design: Get the study design for this block as a data.frame.

• assay_means: Get the model assay means as a data.frame.

• group_standards: Get the model normalised group quantifications as a data.frame.

• group_quants: Get the model normalised group quantifications as a data.frame.

biospi/deamass documentation built on May 20, 2023, 3:30 a.m.