import_OpenSWATH: Import OpenSWATH data
In biospi/deamass: Statistical modelling for mass spectrometry omics
import_OpenSWATH R Documentation
Import OpenSWATH data
Description
Reads in the output of an OpenSWATH -> PyProphet -> TRIC pipeline.
Usage
import_OpenSWATH(
file = NULL,
max.m_score = 0.05,
use.shared.peptides = FALSE,
use.decoys = FALSE,
data = NULL
)
Arguments
max.m_score
Include only measurements with PyProphet m_score >= than this?
data
Advanced: Rather than specifying a file, you can enter a data.frame preloaded with
fread default parameters.
files
A csv file to import.
Value
A data.frame for input into seaMass_sigma.
biospi/deamass documentation built on May 20, 2023, 3:30 a.m.
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| import_OpenSWATH | R Documentation |
Import OpenSWATH data
Description
Reads in the output of an OpenSWATH -> PyProphet -> TRIC pipeline.
Usage
import_OpenSWATH(
file = NULL,
max.m_score = 0.05,
use.shared.peptides = FALSE,
use.decoys = FALSE,
data = NULL
)
Arguments
max.m_score |
Include only measurements with PyProphet m_score >= than this? |
data |
Advanced: Rather than specifying a |
files |
A |
Value
A data.frame for input into seaMass_sigma.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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