import_MaxQuant: Import MaxQuant LF data

Description Usage Arguments Value

Description

Reads in MaxQuant evidence.txt and proteinGroups.txt.

Usage

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import_MaxQuant(
  proteinGroups.file = NULL,
  evidence.file = NULL,
  use.decoys = FALSE,
  use.shared.peptides = FALSE,
  use.only.identified.by.site = FALSE,
  use.potential.contaminant = FALSE,
  proteinGroups.data = NULL,
  evidence.data = NULL,
  as.data.table = F
)

Arguments

proteinGroups.file

Location of the proteinGroups.txt file.

evidence.file

Location of the evidence.txt file.

shared

Include shared peptides?

data

Advanced: Rather than specifying file, you can enter a data.frame preloaded with fread default parameters.

Value

A data.frame for input into bayesprot.


biospi/deamass documentation built on Nov. 25, 2021, 1:18 p.m.