theta_control-class: Control parameters for seaMass-theta
In biospi/deamass: Statistical modelling for mass spectrometry omics

theta_control-class

R Documentation

Control parameters for seaMass-theta

Description

Define control parameters for the seaMass-theta Bayesian model.

Usage

theta_control(
  keep = "group.quants",
  summarise = c("assays", "groups"),
  plot = c("assay.means", "group.standards", "group.quants", "group.quants.pca"),
  model = "theta",
  nwarmup = 256,
  thin = 4,
  random.seed = 0
)

Arguments

`keep`	Outputs to keep MCMC samples for, `NULL`
`summarise`	Outputs to write csv summaries for, `NULL` or a subset of `c("assays", "groups")` Note, you must summarise or keep `"group.quants"` if you want to run seaMass-delta!
`plot`	Outputs to plot, `NULL` or a subset of `c("assay.means", "group.quants")`
`nwarmup`	Number of MCMC warmup iterations to run for each chain
`thin`	MCMC thinning factor
`random.seed`	Random number seed