R/generics.R

In biospi/deamass: Statistical modelling for mass spectrometry omics

if (!exists("assay_components")) setGeneric("assay_components", function(object, ...) standardGeneric("assay_components"))
if (!exists("assay_design")) setGeneric("assay_design", function(object, ...) standardGeneric("assay_design"))
if (!exists("assay_deviations")) setGeneric("assay_deviations", function(object, ...) standardGeneric("assay_deviations"))
if (!exists("assay_means")) setGeneric("assay_means", function(object, ...) standardGeneric("assay_means"))
if (!exists("assay_groups")) setGeneric("assay_groups", function(object, ...) standardGeneric("assay_groups"))
if (!exists("assay_stdevs")) setGeneric("assay_stdevs", function(object, ...) standardGeneric("assay_stdevs"))
if (!exists("assemble_report")) setGeneric("assemble_report", function(object, ...) standardGeneric("assemble_report"))
if (!exists("blocks")) setGeneric("blocks", function(object, ...) standardGeneric("blocks"))
if (!exists("config")) setGeneric("config", function(object, ...) standardGeneric("config"))
if (!exists("container")) setGeneric("container", function(object, ...) standardGeneric("container"))
if (!exists("components")) setGeneric("components", function(object, ...) standardGeneric("components"))
if (!exists("component_deviations")) setGeneric("component_deviations", function(object, ...) standardGeneric("component_deviations"))
if (!exists("component_deviations_de")) setGeneric("component_deviations_de", function(object, ...) standardGeneric("component_deviations_de"))
if (!exists("component_deviations_fdr")) setGeneric("component_deviations_fdr", function(object, ...) standardGeneric("component_deviations_fdr"))
if (!exists("component_means")) setGeneric("component_means", function(object, ...) standardGeneric("component_means"))
if (!exists("component_stdevs")) setGeneric("component_stdevs", function(object, ...) standardGeneric("component_stdevs"))
if (!exists("control")) setGeneric("control", function(object, ...) standardGeneric("control"))
if (!exists("dea_MCMCglmm")) setGeneric("dea_MCMCglmm", function(object, ...) standardGeneric("dea_MCMCglmm"))
if (!exists("del")) setGeneric("del", function(object, ...) standardGeneric("del"))
if (!exists("fdr_ash")) setGeneric("fdr_ash", function(object, ...) standardGeneric("fdr_ash"))
if (!exists("filepath")) setGeneric("filepath", function(object, ...) standardGeneric("filepath"))
if (!exists("generate_markdown")) setGeneric("generate_markdown", function(object, ...) standardGeneric("generate_markdown"))
if (!exists("group_means")) setGeneric("group_means", function(object, ...) standardGeneric("group_means"))
if (!exists("group_quants")) setGeneric("group_quants", function(object, ...) standardGeneric("group_quants"))
if (!exists("group_quants_de")) setGeneric("group_quants_de", function(object, ...) standardGeneric("group_quants_de"))
if (!exists("group_quants_fdr")) setGeneric("group_quants_fdr", function(object, ...) standardGeneric("group_quants_fdr"))
if (!exists("group_standards")) setGeneric("group_standards", function(object, ...) standardGeneric("group_standards"))
if (!exists("groups")) setGeneric("groups", function(object, ...) standardGeneric("groups"))
if (!exists("imported_data")) setGeneric("imported_data", function(object, ...) standardGeneric("imported_data"))
if (!exists("lingofy")) setGeneric("lingofy", function(object, ...) standardGeneric("lingofy"))
if (!exists("name")) setGeneric("name", function(object, ...) standardGeneric("name"))
if (!exists("measurements")) setGeneric("measurements", function(object, ...) standardGeneric("measurements"))
if (!exists("measurement_means")) setGeneric("measurement_means", function(object, ...) standardGeneric("measurement_means"))
if (!exists("measurement_stdevs")) setGeneric("measurement_stdevs", function(object, ...) standardGeneric("measurement_stdevs"))
if (!exists("model")) setGeneric("model", function(object, ...) standardGeneric("model"))
if (!exists("normalise_theta")) setGeneric("normalise_theta", function(object, ...) standardGeneric("normalise_theta"))
if (!exists("normalise_median")) setGeneric("normalise_median", function(object, ...) standardGeneric("normalise_median"))
if (!exists("normalise_quantile")) setGeneric("normalise_quantile", function(object, ...) standardGeneric("normalise_quantile"))
if (!exists("open_deltas")) setGeneric("open_deltas", function(object, ...) standardGeneric("open_deltas"))
if (!exists("open_thetas")) setGeneric("open_thetas", function(object, ...) standardGeneric("open_thetas"))
if (!exists("parent")) setGeneric("parent", function(object, ...) standardGeneric("parent"))
if (!exists("plot_assay_means")) setGeneric("plot_assay_means", function(object, ...) standardGeneric("plot_assay_means"))
if (!exists("plot_assay_stdevs")) setGeneric("plot_assay_stdevs", function(object, ...) standardGeneric("plot_assay_stdevs"))
if (!exists("plot_component_deviations")) setGeneric("plot_component_deviations", function(object, ...) standardGeneric("plot_component_deviations"))
if (!exists("plot_component_deviations_de")) setGeneric("plot_component_deviations_de", function(object, ...) standardGeneric("plot_component_deviations_de"))
if (!exists("plot_component_deviations_fdr")) setGeneric("plot_component_deviations_fdr", function(object, ...) standardGeneric("plot_component_deviations_fdr"))
if (!exists("plot_component_means")) setGeneric("plot_component_means", function(object, ...) standardGeneric("plot_component_means"))
if (!exists("plot_component_stdevs")) setGeneric("plot_component_stdevs", function(object, ...) standardGeneric("plot_component_stdevs"))
if (!exists("plot_dists")) setGeneric("plot_dists", function(object, ...) standardGeneric("plot_dists"))
if (!exists("plot_group_means")) setGeneric("plot_group_means", function(object, ...) standardGeneric("plot_group_means"))
if (!exists("plot_group_quants")) setGeneric("plot_group_quants", function(object, ...) standardGeneric("plot_group_quants"))
if (!exists("plot_group_quants_de")) setGeneric("plot_group_quants_de", function(object, ...) standardGeneric("plot_group_quants_de"))
if (!exists("plot_group_quants_fdr")) setGeneric("plot_group_quants_fdr", function(object, ...) standardGeneric("plot_group_quants_fdr"))
if (!exists("plot_group_standards")) setGeneric("plot_group_standards", function(object, ...) standardGeneric("plot_group_standards"))
if (!exists("plot_fdr")) setGeneric("plot_fdr", function(object, ...) standardGeneric("plot_fdr"))
if (!exists("plot_measurement_means")) setGeneric("plot_measurement_means", function(object, ...) standardGeneric("plot_measurement_means"))
if (!exists("plot_measurement_stdevs")) setGeneric("plot_measurement_stdevs", function(object, ...) standardGeneric("plot_measurement_stdevs"))
if (!exists("plot_pr")) setGeneric("plot_pr", function(object, ...) standardGeneric("plot_pr"))
if (!exists("plot_priors")) setGeneric("plot_priors", function(object, ...) standardGeneric("plot_priors"))
if (!exists("plot_robust_pca")) setGeneric("plot_robust_pca", function(object, ...) standardGeneric("plot_robust_pca"))
if (!exists("plot_volcano")) setGeneric("plot_volcano", function(object, ...) standardGeneric("plot_volcano"))
if (!exists("plots")) setGeneric("plots", function(object, ...) standardGeneric("plots"))
if (!exists("prepare_delta")) setGeneric("prepare_delta", function(object, ...) standardGeneric("prepare_delta"))
if (!exists("prepare_sigma")) setGeneric("prepare_sigma", function(object, ...) standardGeneric("prepare_sigma"))
if (!exists("prepare_theta")) setGeneric("prepare_theta", function(object, ...) standardGeneric("prepare_theta"))
if (!exists("process")) setGeneric("process", function(object, ...) standardGeneric("process"))
if (!exists("process0")) setGeneric("process0", function(object, ...) standardGeneric("process0"))
if (!exists("process1")) setGeneric("process1", function(object, ...) standardGeneric("process1"))
if (!exists("priors")) setGeneric("priors", function(object, ...) standardGeneric("priors"))
if (!exists("read")) setGeneric("read", function(object, ...) standardGeneric("read"))
if (!exists("render_markdown")) setGeneric("render_markdown", function(object, ...) standardGeneric("render_markdown"))
if (!exists("report")) setGeneric("report", function(object, ...) standardGeneric("report"))
if (!exists("root")) setGeneric("root", function(object, ...) standardGeneric("root"))
if (!exists("robust_pca")) setGeneric("robust_pca", function(object, ...) standardGeneric("robust_pca"))
if (!exists("standardise_group_quants")) setGeneric("standardise_group_quants", function(object, ...) standardGeneric("standardise_group_quants"))
if (!exists("summary")) setGeneric("summary", function(object, ...) standardGeneric("summary"))
if (!exists("timings")) setGeneric("timings", function(object, ...) standardGeneric("timings"))
if (!exists("top_groups")) setGeneric("top_groups", function(object, ...) standardGeneric("top_groups"))
if (!exists("run")) setGeneric("run", function(object, ...) standardGeneric("run"))