subtree: Subtree
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
The function returns the subtree under the node inode
Usage
1
Arguments
inode
the root node of the subtree
name
the species names
nodematrix
the tree node matrix
Value
The function returns the tree string of the subtree.
Author(s)
Liang Liu lliu@harvard.edu
See Also
Examples
1
2
3
4
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
spname<-read.tree.nodes(treestr)$names
subtree(7,spname,nodematrix)
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
The function returns the subtree under the node inode
Usage
1 |
Arguments
inode |
the root node of the subtree |
name |
the species names |
nodematrix |
the tree node matrix |
Value
The function returns the tree string of the subtree.
Author(s)
Liang Liu lliu@harvard.edu
See Also
Examples
1 2 3 4 | treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
spname<-read.tree.nodes(treestr)$names
subtree(7,spname,nodematrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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