swap.nodes: Swap two nodes
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Value
Note
Author(s)
See Also
Examples
Description
The function swapps two subtrees.
Usage
1
swap.nodes(inode, jnode, name, nodematrix)
Arguments
inode
the root node of the first subtree
jnode
the root node of the second subtree
name
the species names
nodematrix
the tree node matrix
Value
nodes
the tree node matrix after swapping
treestr
the tree string after swapping
Note
The function is unable to swap two overlapped subtrees.
Author(s)
Liang Liu lliu@uga.edu
See Also
Examples
1
2
3
4
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
spname<-read.tree.nodes(treestr)$names
swap.nodes(1,2,spname,nodematrix)
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Value Note Author(s) See Also Examples
Description
The function swapps two subtrees.
Usage
1 | swap.nodes(inode, jnode, name, nodematrix)
|
Arguments
inode |
the root node of the first subtree |
jnode |
the root node of the second subtree |
name |
the species names |
nodematrix |
the tree node matrix |
Value
nodes |
the tree node matrix after swapping |
treestr |
the tree string after swapping |
Note
The function is unable to swap two overlapped subtrees.
Author(s)
Liang Liu lliu@uga.edu
See Also
Examples
1 2 3 4 | treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
spname<-read.tree.nodes(treestr)$names
swap.nodes(1,2,spname,nodematrix)
|
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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