Description Usage Arguments Details Value Author(s) See Also
This is an internal function used to calculate the loglikelihood of triples.
1 | triplepara(inode,jnode,nodematrix,nspecies)
|
inode |
the decendant node in the triple |
jnode |
the ancestral node in the triple |
nodematrix |
the species tree |
nspecies |
the number of species |
This function is used to calculate triple likelihoods.
The function returns the theta and gamma in a triple.
Liang Liu lliu@uga.edu
write.subtree
, read.tree.string
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