triplepara: Internal function

Description Usage Arguments Details Value Author(s) See Also

Description

This is an internal function used to calculate the loglikelihood of triples.

Usage

1
triplepara(inode,jnode,nodematrix,nspecies)

Arguments

inode

the decendant node in the triple

jnode

the ancestral node in the triple

nodematrix

the species tree

nspecies

the number of species

Details

This function is used to calculate triple likelihoods.

Value

The function returns the theta and gamma in a triple.

Author(s)

Liang Liu lliu@uga.edu

See Also

write.subtree, read.tree.string


bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.