write.tree.string: Write a tree file

In bomeara/phybase: Basic functions for phylogenetic analysis

Description

The function writes tree strings to a file in NEXUS or PHYLIP format.

Usage

write.tree.string(X, format = "Nexus", file = "", name = "")

Arguments

X	a vector of tree strings
format	tree file format
file	the file name
name	the species names

Details

If name is provided, the function will use name as the species names in the translation block in the NEXUS tree file. Otherwise, the species names will be extracted from the tree strings.

Value

The function returns a tree file in the format of NEXUS or PHYLIP.

Author(s)

Liang Liu [e-mail]

References

Felsenstein, J. The Newick tree format. http://evolution.genetics.washington.edu/phylip/newicktree.html

See Also

write.subtree, read.tree.string

bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.