bpollner/aquap2
Multivariate Data Analysis Tools for R including Aquaphotomics Methods

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bpollner/aquap2: Multivariate Data Analysis Tools for R including Aquaphotomics Methods
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API

API for bpollner/aquap2
Multivariate Data Analysis Tools for R including Aquaphotomics Methods

Global functions
$<-,aquap_mergeLabels-method Man page
-,aquap_data,aquap_data-method Man page
.onLoad Source code
.onUnload Source code
/,aquap_data,aquap_data-method Man page
Extract_Elements Man page
PirIndexes Source code
PirInfo Source code
[,aquap_data-method Man page
[<-,aquap_mergeLabels-method Man page
adLinesToVector Man page
adaptIdStringForDpt Source code
adaptIndepDatasetForWls Source code
adaptSort_X_Names Source code
addMissingKeys Source code
alignTempRelHum Source code
anproc_file Man page
ap2_settings_setup Man page Source code
ap2dme Man page Source code
ap_checExistence_Defaults Source code
ap_checkAquagramDefaults Source code
ap_check_classifier_Input Source code
ap_check_dptModules Source code
ap_check_gp_generalPlottingDefaults Source code
ap_check_pca_defaults Source code
ap_check_plsr_Input Source code
ap_cleanOutZeroValues Source code
ap_cleanZeroValuesCheckExistenceDefaults Source code
ap_reCheckAqgBootR Source code
apply_dpt_ssc_dpt_toIndepDataset Source code
aq_checkColors Source code
aq_checkLegendTextMod Source code
aq_checkPlotType Source code
aq_checkReSortLegendColor Source code
aq_checkReSortPlotData Source code
aq_checkSelWls Source code
aq_checkTrippleDotsCalc Source code
aq_getFixScaleText Source code
aq_getMinusText Source code
aq_getOrder Source code
aq_makeGraphicsTexts Source code
aq_makeNicePlottingFrame_circ Source code
aq_makeNicePlottingFrame_linear Source code
aq_makePolygons Source code
aq_makePolygons_OLD Source code
aq_plotCore_sigTable Source code
aquap2 Man page
aquap2_handover_to_uniset Man page Source code
aquap_cpt Man page
aquap_cube Man page
aquap_data-methods Man page
aquap_set Man page
autoUpS Source code
calc_NNET_args Man page
calc_SVM_args Man page
calc_aqg_args Man page
calc_aqg_modes Man page
calc_discrimAnalysis_args Man page
calc_emsc Source code
calc_groupAverages Source code
calc_interclassDist Source code
calc_interclassDist_mat Source code
calc_interclassResid Source code
calc_pca_args Man page
calc_pls_args Man page
calc_randomForest_args Man page
calc_sim_args Man page
calculateAquagram Source code
calculateAverageOfTablesList Source code
calculateColwiseAvgOfNumericList Source code
calculateConfusionTableInPercent Source code
calculateCorrectClassificationInPercent Source code
calculateIndepClassifXPrediction Source code
calculateIndepClassifXPrediction_inner Source code
calculateIndepPlsPrediction Source code
calculateInterclassDistances Source code
calculateMeanOfList Source code
calculatePCA Source code
calculatePLSR Source code
calculateSIMCA Source code
calculateVariable Man page Source code
calculate_ANN Source code
calculate_Avg_SDs_confPercList Source code
calculate_RNF Source code
calculate_SVM Source code
calculate_XDA Source code
calculate_checkEntry Source code
calculate_postChecking Source code
checkApsChar Source code
checkBlowUpInput_grouping Source code
checkCubeForRealStats Source code
checkDatasetVersion Source code
checkDeTrendSrcTrgInput Source code
checkFileVersionPossiblyModify Source code
checkForExperimentFolderStructure Source code
checkForPresenceOfData Source code
checkForStats Source code
checkHaveParallel Source code
checkLoadNoiseFile Source code
checkNrOfWorkers Source code
checkOnLocal Source code
checkOnTest Source code
checkSimcaPlottingValues Source code
checkTempCalibFile Source code
checkTransformBlowUpInput_TnAn Source code
checkTransitToUniset_MaybeRenameSettingsFile Source code
checkTransitTo_SLxlsx_MaybeMakeMetadataBackup Source code
check_apDefaults Source code
check_apVersion Source code
check_conScanColumn Source code
check_indPlsPrediction_input Source code
check_indXClassifPrediction_input Source code
check_mdDefaultValues Source code
check_mdDefaults Source code
check_mdVersion Source code
check_sampleNumberColumn Source code
check_sl_existence Source code
check_sub_input Source code
classification_helpers Man page
cleanCPPattern Source code
cleanOutLastEmptiesFromftLocalR Source code
collectRanges Source code
combineVariable Man page Source code
combine_checkEntry Source code
convertCColsToFactor Source code
convertToRDP Source code
convertYColsToNumeric Source code
copyYColsAsClass Source code
coreClassCalc_FDA Source code
coreClassCalc_LDA Source code
coreClassCalc_QDA Source code
coreClassCalc_SVM Source code
coreClassCalc_mclustDA Source code
coreClassCalc_nnet Source code
coreClassCalc_randomForest Source code
correctSimcaGroupingForDataset Source code
correct_cpt Source code
countDecimals Source code
createCustomGroupList Source code
createOutlierFlagList Source code
createPirMatrix Source code
createPlsrSegments Source code
createRandomizedSampleList Source code
createSegmentList Source code
createSegmentListForClassification Source code
createSingleTimePointSampleList Source code
ctKeepData Source code
custom_TRH Man page
custom_import Man page
deleteSurplusKeys Source code
dev_collectNcomps Source code
divide_two_aquap_data_M Source code
doApsTrick Source code
do_addNoise Man page Source code
do_avg Man page Source code
do_blowup Man page Source code
do_ddply Source code
do_detrend Man page Source code
do_dptSeq Man page Source code
do_emsc Man page Source code
do_gapDer Man page Source code
do_msc Man page Source code
do_resampleNIR Man page Source code
do_scale Source code
do_scale_fc Source code
do_sgolay Man page Source code
do_sgolay_sys Source code
do_snv Man page Source code
dpt_modules Man page
esl Man page Source code
excludePlsrOutliers Source code
exportAdditionalModelToAp2GD Source code
exportPredListToExcel Source code
exportSampleList Man page Source code
export_ap2_ToXlsx Man page Source code
export_header_toXls Man page Source code
extractClassesForColRep Source code
extractColorLegendValues Source code
flagOutliers_allScope Source code
gdmm Man page Source code
genFolderStr Man page Source code
genMergeLabels_checkInput Source code
genMergeLabels_checkType Source code
genNoiseRecExp Man page Source code
genTempCalibExp Man page
generateHeatMapColorCoding Source code
generateMergeLabels Man page
generateMergeLabels,aquap_data,aquap_data,character,character-me Man page
generateMergeLabels,list,character,character,list-method Man page
generateMergeLabels,list,character,character,missing-method Man page
generateMergeLabels,list,missing,character,character-method Man page
generateMergeLabels_list_2_M Source code
generateMergeLabels_list_3_M Source code
generateMergeLabels_list_M Source code
generateMergeLabels_sys Source code
generateMergeLabels_twoDatasets_M Source code
getCheckForDoubleNames Source code
getCheckLegendPosition Source code
getClassStructureFromXlsx Source code
getClassifierFunction Source code
getColRep_data Source code
getColRep_set Source code
getCubeNrs Source code
getDesiredNrCPUs Source code
getFullData Man page Source code
getHeader Man page
getHeader,aquap_data-method Man page
getHeader,aquap_set-method Man page
getHeader_dataset Source code
getHeader_set Source code
getKeyTxtCenter Source code
getKeysOnlyFromText Source code
getMaxSpace Source code
getMissingKVPs Source code
getNIRData_Pirouette Source code
getNIRData_Vision_da Source code
getNIR_df_dataset Source code
getNIR_df_set Source code
getNirDataPlusMeta_YunosatoDat Source code
getNirData_Excel Source code
getNirData_microNIR Source code
getNirData_plainText Source code
getPirHead Source code
getPirTable Source code
getR2C Source code
getR2CV Source code
getR2P Source code
getRMSEC Source code
getRMSECV Source code
getRMSEP Source code
getStdColnames Source code
getTextBetweenPac Source code
getTruePercTestAndRounds Source code
getTxtEmptyBelowPacKey Source code
getTxtsBetweenLocal Source code
getUniqLevelColor Source code
getVecRMSEC Source code
getVecRMSECV Source code
getVecRMSECV_adj Source code
getWavelengths Man page
getWavelengths,aquap_data-method Man page
getWavelengths,aquap_set-method Man page
getWavelengths_dataset Source code
getWavelengths_set Source code
getap Man page Source code
getap_core Source code
getap_core_file Source code
getbr Source code
getcd Man page Source code
getcm Man page Source code
getmd Man page Source code
getmd_core Source code
getstn Man page Source code
gfd Man page Source code
gfd_TRH_checkCustomImport Source code
gfd_checkLoadSaveLogic Source code
gfd_checkMetadata Source code
gfd_checkNrOfRows Source code
gfd_checkOverwrite_sl_trh_multRows Source code
gfd_checkRemoveDoubleColumns Source code
gfd_check_imports Source code
gfd_check_trhLog_defaults Source code
gfd_getExpNameNoSplit Source code
gfd_importData Source code
gfd_importMakeTRH_alignment Source code
gfd_makeNiceColumns Source code
gfd_possibly_multiplySampleListRows Source code
gfd_removeHeaderDataFromRawImport Source code
haveClassicAqg Source code
imp_searchAskColumns Man page Source code
importExport_raw_toXls Man page Source code
importTRH_ESPEC Source code
importTRH_HoboWare Source code
initializeExtraModelsList Source code
insertEnumeration Source code
insertEnvControls Source code
insertErrorColumn Source code
insertNoSplit Source code
insertTRH Source code
interpWls Source code
is.wholenumber Source code
loadAQdata Man page Source code
lotto_loop Source code
makeAllClasses Source code
makeAllModels Source code
makeAvgLegTxt Source code
makeCPT Source code
makeClassifDataFrameForBarplot Source code
makeColorsTransparent Source code
makeCompPattern Source code
makeConfusionTable Source code
makeDataFrameForClassification Source code
makeFlatDataFrame Source code
makeFlatDataFrameMulti Source code
makeGroups Source code
makeIdString Source code
makeIndepClassifXValidationPlots Source code
makeIndepPlsrValidationPlots Source code
makeIndepPlsrValidationPlots_inner Source code
makeNamedGrpNumsAp2 Source code
makeOuterSplitDatasets Source code
makeOuterSplitList Source code
makePCALoadingPlots Source code
makePCAScorePlots Source code
makePLSRErrorPlots Source code
makePLSRErrorPlots_inner Source code
makePLSRModel_inner Source code
makePLSRModels Source code
makePLSRRegressionVectorPlots Source code
makePLSRRegressionVectorPlots_inner Source code
makePcaVariableReduction Source code
makePchGroup Source code
makePchLegend Source code
makePchSingle Source code
makeReplications Source code
makeSimcaClassDistPlots Source code
makeSimcaClassDistPlots_inner Source code
makeSimcaModel_inner Source code
makeSimcaModels Source code
makeSimcaPrediction_inner Source code
makeSimcaPredictions Source code
makeSingleBlock Source code
makeSingleClass Source code
makeSplitByClassFrame Source code
makeTimeLabelSampleList Source code
make_X_classif_handoverType Source code
make_X_classif_models Source code
make_Xclass_model_CV_single Source code
make_Xclass_models_CV_outer Source code
make_Xclass_models_boot Source code
make_Xclass_models_inner Source code
make_ap2dme_instructions Source code
manualDatasetSubscripting Source code
maybeAssignPlsrClusterToPlsrFunction Source code
maybeGeneratePlsrCluster Source code
maybeMakeSwarm Source code
maybeStopPlsrCluster Source code
mergeDatasets Man page
mergeDatasets,aquap_data,aquap_data,aquap_mergeLabels-method Man page
mergeDatasets,aquap_data,aquap_data,missing-method Man page
mergeDatasets,list,aquap_mergeLabels,missing-method Man page
mergeDatasets,list,missing,aquap_mergeLabels-method Man page
mergeDatasets,list,missing,missing-method Man page
mergeDatasets_list Source code
mergeDatasets_list_mergeLabels_2_M Source code
mergeDatasets_list_mergeLabels_M Source code
mergeDatasets_list_noLabels_M Source code
mergeDatasets_two Source code
mergeDatasets_two_mergeLabels_M Source code
mergeDatasets_two_noLabels_M Source code
mergeLabelObj_toList Source code
merge_checkLabelObject Source code
merge_checkLabels Source code
merge_checkListInput Source code
merge_checkResaMethodInput Source code
merge_checkResaToInput Source code
merge_checkWlsActual Source code
merge_checkWlsDeltas Source code
merge_checknoMatchChar Source code
merge_cutNirOutsiders Source code
merge_fillInNirOutsiders Source code
merge_findBestResaToWls Source code
merge_getCutRange Source code
merge_getFillRange Source code
merge_getOptimalDSindex Source code
merge_getTargetWls Source code
merge_labelObjectToSlot Source code
merge_makeMissVisual Source code
merge_makeMissVisualNIR Source code
merge_makeNewLabelBlock Source code
merge_readInChoice Source code
metadata_file Man page
mod_md_logic Source code
mod_md_num Source code
mod_md_txt Source code
modifyThisAp Source code
multiplyBlocks Source code
multiplyByBinary Source code
multiplyByWlSplits Source code
multiplyClassWithNextClass Source code
noi_calculateNoiseDistribution Source code
noi_performNoise Source code
noise_procedures Man page
performConSAvg Source code
performDPT_Core Source code
performDpt_Post Source code
performDpt_Pre Source code
performExcludeOutliers Source code
performMajorityVote Source code
performNoise Source code
pickPeaks Source code
pickPeaksInner Source code
pickPeaksNeg_RW Source code
pickPeaksPos_RW Source code
pickPeaks_RW Source code
pir_importPirFile Source code
pleaaseCopyAsTemplate Source code
plot,aquap_cube,missing-method Man page
plot,aquap_data,missing-method Man page
plotAquagram_single Source code
plotAvgSpectra Source code
plotDelGiudiceAreas Source code
plotHumidityWlsLines Source code
plotPCA_Loadings Source code
plotPCA_Scores Source code
plotPeaks Source code
plotPlsrErrorPoints Source code
plotRawSpectra Source code
plotSpecialWlsLines Source code
plotSpectra_inner Source code
plotSpectra_outer Source code
plotSubtrAvgSpectra Source code
plotVerticalLinesFromPeaks Source code
plot_NNET_args Man page
plot_SVM_args Man page
plot_all_modells Man page
plot_aqg Man page Source code
plot_aqg_args Man page
plot_aquagram_inner Source code
plot_classifX_indepPred Man page Source code
plot_classif_CubeElement Source code
plot_classif_PredListElement Source code
plot_classif_generalHandover Source code
plot_classif_typeClassOn Source code
plot_cube Man page Source code
plot_cube_M Source code
plot_da Man page
plot_da,aquap_cube-method Man page
plot_da_cube Source code
plot_da_cube_M Source code
plot_discrimAnalysis_args Man page
plot_nnet Man page
plot_nnet,aquap_cube-method Man page
plot_nnet_cube Source code
plot_nnet_cube_M Source code
plot_pca Man page
plot_pca,aquap_cube-method Man page
plot_pca,aquap_data-method Man page
plot_pca_args Man page
plot_pca_checkDefaultsParams Source code
plot_pca_cube Source code
plot_pca_cube_M Source code
plot_pca_data Source code
plot_pca_data_M Source code
plot_pg_args Man page
plot_pls Man page
plot_pls,aquap_cube-method Man page
plot_pls_args Man page
plot_pls_cube Source code
plot_pls_cube_M Source code
plot_pls_indepPred Man page Source code
plot_plsr_calibValidSwarm Source code
plot_plsr_calibration_classic Source code
plot_plsr_checkDefaultsParams Source code
plot_plsr_error Source code
plot_plsr_errorBars Source code
plot_plsr_validation_classic Source code
plot_randomForest_args Man page
plot_rnf Man page
plot_rnf,aquap_cube-method Man page
plot_rnf_cube Source code
plot_rnf_cube_M Source code
plot_sim_args Man page
plot_simca Man page
plot_simca,aquap_cube-method Man page
plot_simca_cube Source code
plot_simca_cube_M Source code
plot_spectra Man page
plot_spectra,aquap_cube-method Man page
plot_spectra,aquap_data-method Man page
plot_spectra_Cube Source code
plot_spectra_Cube_M Source code
plot_spectra_Data Source code
plot_spectra_Data_M Source code
plot_svm Man page
plot_svm,aquap_cube-method Man page
plot_svm_cube Source code
plot_svm_cube_M Source code
pls_outlier_getIndices Man page Source code
pls_outlier_makeIndices Source code
pls_outlier_makeList Source code
pls_pred_checkColorBy Source code
plsr_plotErrors Source code
plsr_plotRegressionVectors Source code
printIds Source code
printMessagePairing Source code
printMessagePairing_classif Source code
printStdColnames Man page Source code
processSingleRow_CPT Source code
r_itemize Source code
r_listize Source code
randomizeSampleList Source code
reColor Man page Source code
reFactor Source code
readHeader Man page Source code
readHeader_checkDefaults Source code
readInSpecAreas Source code
readSpec_checkDefaults Source code
readSpectra Man page Source code
readTRHlogfile Source code
reduceEmptyLines Source code
registerParallelBackend Source code
remakeTRHClasses_sys Source code
resampleNIR_inner Source code
resampleNIR_singleRow Source code
rw_PCA Source code
rw_screeplot Source code
rw_variances Source code
sampleList_multiplyRows Man page Source code
saveAQdata Man page Source code
secureTRUE_FALSE_inColnames Source code
selectWls Man page Source code
setAllSplitVarsToNull Source code
setCheck_NumericLengthOne Source code
settings_file Man page
showCube Source code
showMergeLabels Source code
show_aquap_data Source code
siWl Man page Source code
siWlg Man page Source code
simca_barplotClassDistances Source code
simca_plotClassDistances Source code
sl_checkVals Source code
sl_multiplyRows_sys Source code
sl_renameSingleLineSampleList Source code
sl_writeNiceExcelFilePlease Source code
split_dataset Man page
ssc Man page Source code
ssc_s Source code
subtract_two_aquap_data_M Source code
tellKeyAddDelete Source code
tempCalib_procedures Man page
testUniset Man page Source code
test_getLocalStn Source code
test_plotMaxima Source code
test_plotNoiseData Source code
test_plotSDValues Source code
test_plotSinglePool Source code
test_plotSingleResult Source code
test_plotSingleResult_static Source code
test_plotStaticNoise Source code
transformNrsIntoColorCharacters Source code
ttap Man page Source code
ttapM Man page Source code
turnStringsIntoFactors Source code
updateSettings Man page Source code
bpollner/aquap2 documentation built on June 29, 2024, 5:21 p.m.

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