Man pages for bpollner/aquap2
Multivariate Data Analysis Tools for R including Aquaphotomics Methods
| adLinesToVector | Ad Lines to a Vector Plot |
| anproc_file | Analysis Procedure File |
| ap2dme | Download and Make Example Experiment |
| ap2_settings_setup | Perform Setup |
| aquap2 | Multivariate Data Analysis Tools for R including... |
| aquap2_handover_to_uniset | Handover to Uniset |
| aquap_cpt | Class 'aquap_cpt' |
| aquap_cube | Class 'aquap_cube' |
| aquap_data-methods | aquap_data methods |
| aquap_set | Class 'aquap_set' |
| calc_aqg_args | Calculate Aquagram - Arguments |
| calc_aqg_modes | Calculate Aquagram - Modes |
| calc_discrimAnalysis_args | Calculate Discriminant Analysis - Arguments |
| calc_NNET_args | Calculate NNET - Arguments |
| calc_pca_args | Calculate PCA - Arguments |
| calc_pls_args | Calculate PLSR - Arguments |
| calc_randomForest_args | Calculate Random Forest - Arguments |
| calc_sim_args | Calculate SIMCA - Arguments |
| calc_SVM_args | Calculate SVM - Arguments |
| calculateVariable | Calculate Variable |
| classification_helpers | Classification - General Considerations |
| combineVariable | Combine Variable |
| custom_import | Customising Spectral Import |
| custom_TRH | Customising Import from Logger-files |
| do_addNoise | Add Noise to Dataset |
| do_avg | Average spectra in a dataset |
| do_blowup | Increase the Numbers of Observation in Dataset |
| do_detrend | Perform De-Trend |
| do_dptSeq | Perform Data-Pretreatment Sequence |
| do_emsc | Perform EMSC |
| do_gapDer | Perform gap-segment derivatives |
| do_msc | Perform MSC |
| do_resampleNIR | Resample data to new Wavelengths |
| do_sgolay | Perform Smoothing and / or m-th Derivative |
| do_snv | Calculate Standard Normal Variation SNV |
| dpt_modules | Data pre-treatment modules |
| export_ap2_ToXlsx | Export Data to xlsx |
| export_header_toXls | Export Header to Xls |
| exportSampleList | Create and Export Sample Lists |
| Extract_Elements | Extract Elements |
| gdmm | *** Generate Datasets and make Models *** |
| generateMergeLabels | Generate Merge Labels |
| genFolderStr | Generate Folder Structure |
| genNoiseRecExp | Generate noise recording experiment |
| genTempCalibExp | Generate temperature recording experiment |
| getap | Get Analysis Procedure |
| getcd | Get a single dataset from the 'cube' |
| getcm | Get a single model from the 'cube' |
| getFullData | *** Get / Import Spectral Data *** |
| getmd | Get Metadata |
| getstn | Get settings object |
| getWavelengths | Get Wavelengths |
| importExport_raw_toXls | Import Raw, Export to Xls |
| imp_searchAskColumns | Search and Ask for Column Representation |
| mergeDatasets | Merge Datasets |
| metadata_file | The Metadata File |
| noise_procedures | Record / add noise |
| plot_all_modells | *** Plot All Available Models *** |
| plot_aqg | Plot Aquagram |
| plot_aqg_args | Plot Aquagram - Arguments |
| plot_classifX_indepPred | Plot Independent Predictions |
| plot_DA | plot Discriminant Analysis |
| plot_discrimAnalysis_args | Plot Discriminant Analysis - Arguments |
| plot_NNET | plot Discriminant Analysis |
| plot_NNET_args | Plot NNET - Arguments |
| plot_pca | Plot PCA |
| plot_pca_args | Plot PCA - Arguments |
| plot_pg_args | Plot - General Plotting Arguments |
| plot_pls | Plot PLSR |
| plot_pls_args | Plot PLSR - Arguments |
| plot_pls_indepPred | Independent plsr prediction |
| plot_randomForest_args | Plot Random Forest - Arguments |
| plot_RNF | plot Random Forest |
| plot_sim_args | Plot SIMCA - Arguments |
| plot_simca | Plot SIMCA |
| plot_spectra | Plot Raw Spectra |
| plot_SVM | plot Discriminant Analysis |
| plot_SVM_args | Plot SVM - Arguments |
| pls_outlier_getIndices | PLSR based Outlier Detection |
| printStdColnames | Print standard column names |
| readHeader | Read Header |
| readSpectra | Read Spectra |
| reColor | Re-Color a dataset |
| sampleList_multiplyRows | Multiply Rows in Sample List |
| saveAQdata | Save and load aquap2 datasets |
| selectWls | Select Wavelengths |
| settings_file | The Settings File |
| siWl | Isolate single wavelength |
| siWlg | Reduce Number of Wavelengths |
| split_dataset | Split Dataset |
| ssc | Select Observations |
| tempCalib_procedures | Record and use temperature calibration data |
| testUniset | Test for Uniset |
| ttap | Transform into aquap2 structure |
| updateSettings | Update Settings |
