areaEnrich: aREA.enrich Compute aREA enrichment between all pairwise...
In califano-lab/MOMA: Multi Omic Master Regulator Analysis
Description
Usage
Arguments
Value
Description
aREA.enrich Compute aREA enrichment between all pairwise combinations of
VIPER proteins and gene-level events
Usage
1
areaEnrich(events.mat, vipermat, event.type, verbose)
Arguments
events.mat
A Binary 0/1 matrix with columns as samples, and rows as
proteins
vipermat
A VIPER network of inferred activity scores with columns as
samples, and rows as proteins
event.type
Name of the event type for printing purposes
verbose
whether to print extra progress statements
Value
A matrix of enrichment scores with rows as event/gene names and
columns as VIPER protein names
califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.
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Description Usage Arguments Value
Description
aREA.enrich Compute aREA enrichment between all pairwise combinations of VIPER proteins and gene-level events
Usage
1 | areaEnrich(events.mat, vipermat, event.type, verbose)
|
Arguments
events.mat |
A Binary 0/1 matrix with columns as samples, and rows as proteins |
vipermat |
A VIPER network of inferred activity scores with columns as samples, and rows as proteins |
event.type |
Name of the event type for printing purposes |
verbose |
whether to print extra progress statements |
Value
A matrix of enrichment scores with rows as event/gene names and columns as VIPER protein names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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