rea: This function calculates an Enrichment Score of Association...

In califano-lab/MOMA: Multi Omic Master Regulator Analysis

Description

This function calculates an Enrichment Score of Association based on how the features rank on the samples sorted by a specific gene

Usage

rea(eset, regulon, minsize = 1, maxsize = Inf, event.type = NA, verbose)

Arguments

eset	Numerical matrix
regulon	A list with genomic features as its names and samples as its entries, indicating presence of event
minsize	The minimum number of events to use when calculating enrichment
maxsize	The maximum number of events to use when calculating enrichment
event.type	Type of event being analyzed
verbose	whether to print extra progress statements

Value

A list containing two elements:

groups

Regulon-specific NULL model containing the enrichment scores

ss

Direction of the regulon-specific NULL model

califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.