sigInteractorsDIGGIT: Filter interactions from NES (DIGGIT) scores and...
In califano-lab/MOMA: Multi Omic Master Regulator Analysis
Description
Usage
Arguments
Value
View source: R/make.interactions.r
Description
Use this version in the Bayes model to rank TFs
Usage
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sigInteractorsDIGGIT(
corrected.scores,
nes.scores,
cindy,
p.thresh = 0.05,
cindy.only = TRUE
)
Arguments
corrected.scores
A list indexed by the genomic event/gene with
corresponding pvals and qvals for each TF
nes.scores
Matrix with tfs as columns, rows are genomic events
cindy
CINDy algorithm output matrix
p.thresh
P-value threshold (default=0.05)
cindy.only
Consider only CINDy validated interactions (default=TRUE)
Value
a list (indexed by VIPER protein) of significant genomic interactions
and associated pvals over the background (null TF) model, and NES scores
califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.
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Description Usage Arguments Value
View source: R/make.interactions.r
Description
Use this version in the Bayes model to rank TFs
Usage
1 2 3 4 5 6 7 | sigInteractorsDIGGIT(
corrected.scores,
nes.scores,
cindy,
p.thresh = 0.05,
cindy.only = TRUE
)
|
Arguments
corrected.scores |
A list indexed by the genomic event/gene with corresponding pvals and qvals for each TF |
nes.scores |
Matrix with tfs as columns, rows are genomic events |
cindy |
CINDy algorithm output matrix |
p.thresh |
P-value threshold (default=0.05) |
cindy.only |
Consider only CINDy validated interactions (default=TRUE) |
Value
a list (indexed by VIPER protein) of significant genomic interactions and associated pvals over the background (null TF) model, and NES scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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