clusterRange: Cluster Range

In califano-lab/MOMA: Multi Omic Master Regulator Analysis

Description

This function generate an cluster structure with 'k' groups and computes the cluster reliability score where 'k' is a range of values

Usage

clusterRange(
  dis,
  range = c(2, 100),
  step = 1,
  cores = 1,
  method = c("pam", "kmeans"),
  data = NULL
)

Arguments

dis	Distance object
range	vector with start and end 'k'
step	Integer indicating the incremental number of clusters to add in each iteration
cores	Maximum number of CPU cores to use
method	Either 'pam' k-mediods or kmeans. Must supply the original data matrix if using kmeans
data	Original data matrix

Value

list of cluster reliability scores by 'k', 'clustering' (the vector solution) and 'reliability' as well as 'medoids' labels

califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.