plotEvents: Plot barchart of genomic events

In califano-lab/MOMA: Multi Omic Master Regulator Analysis

Description

Plot barchart of genomic events

Usage

plotEvents(
  summary.vec,
  highlight.genes = NULL,
  genomeBand_2_gene = NULL,
  samples.total,
  max.muts = 10,
  max.cnv = 5
)

Arguments

summary.vec	: named vector of the counts, named 'Event name':'Type' where type is 'mut', 'amp', 'del', 'fus'. Mutations are in Entrez ID Amp/Deletion CNV events are in genomic band location
highlight.genes	: well known genes to highlight in the analysis in
genomeBand_2_gene	: mapping of genomic location IDs to gene name: vector of HUGO gene ids, named by genomic loci
samples.total	: number of samples in the subtype, used to calculate percentages
max.muts	: maximum number of mutations to get per sample, default is 10
max.cnv	: maximum number of cnvs to per sample, default is 5

Value

plot object

califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.