makeSaturationPlots: Main function to generate the summary plots of the analysis

In califano-lab/MOMA: Multi Omic Master Regulator Analysis

Description

Main function to generate the summary plots of the analysis

Usage

makeSaturationPlots(
  momaObj,
  clustering.solution = NULL,
  important.genes = NULL,
  fCNV = NULL,
  max.events = 30
)

Arguments

momaObj	: momaObj that has already run the saturationCalculation function
clustering.solution	: clustering vector with sample names and cluster designations
important.genes	: vector of gene names to prioritize when plotting. Can be general genes of interest, oncogenes, tumor supressors etc
fCNV	: vector of confirmed functional CNVs if calculated. Will filter for only those CNVs
max.events	: maximum number of events to plot for the oncoplots

Value

object with both types of summary plot for each subtype

Examples

## Not run: 
makeSaturationPlots(momaObj, max.events = 20)

## End(Not run)

califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.