pathwayDiggitIntersect: Combine DIGGIT inferences with pathway knowledge
In califano-lab/MOMA: Multi Omic Master Regulator Analysis
Description
Usage
Arguments
Value
Description
Combine DIGGIT inferences with pathway knowledge
Usage
1
pathwayDiggitIntersect(diggit.int, pathway, pos.nes.only = TRUE, cores = 1)
Arguments
diggit.int
List of interactions between MRs - Genomic events, inferred
by DIGGIT
pathway
- a list indexed by TF/MR entrez ID, contains the named vector
of p-values for interactions
pos.nes.only
Only use positive associations between MR activity and
presence of events (default = True)
cores
Number of cores to use if parallel is selected
Value
numeric vector, zscores for each TF/MR
califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.
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Description Usage Arguments Value
Description
Combine DIGGIT inferences with pathway knowledge
Usage
1 | pathwayDiggitIntersect(diggit.int, pathway, pos.nes.only = TRUE, cores = 1)
|
Arguments
diggit.int |
List of interactions between MRs - Genomic events, inferred by DIGGIT |
pathway |
- a list indexed by TF/MR entrez ID, contains the named vector of p-values for interactions |
pos.nes.only |
Only use positive associations between MR activity and presence of events (default = True) |
cores |
Number of cores to use if parallel is selected |
Value
numeric vector, zscores for each TF/MR
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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