Files in califano-lab/MOMA
Multi Omic Master Regulator Analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/cluster.r
R/data.r
R/dictionary.functions.R
R/diggit.r
R/example.gbm.data.r
R/genomic.saturation.r
R/make.interactions.r
R/make.saturation.plots.r
R/moma.r
R/rank.r
R/sysdata.rda
README.md
data-raw/gene.map.r
data-raw/hgnc.gene.information.txt
data/example.gbm.mae.rda
data/gbm.pathways.rda
data/gene.map.rda
data/mutSig.RData
man/Moma-class.Rd
man/areaEnrich.Rd
man/associateEvents.Rd
man/checkGeneMap.Rd
man/checkList.Rd
man/checkMAE.Rd
man/checkPathways.Rd
man/clusterRange.Rd
man/clusterReliability.Rd
man/cnvScoreStouffer.Rd
man/conditionalModel.Rd
man/conditionalP.Rd
man/empiricalP.Rd
man/example.gbm.mae.Rd
man/fitCurvePercent.Rd
man/gbm.pathways.Rd
man/gene.map.Rd
man/genomicPlotSmall.Rd
man/getCoverage.Rd
man/getDataFrame.Rd
man/getDiggitEmpiricalQvalues.Rd
man/getEmpiricalQvals.Rd
man/getPvalsMatrix.Rd
man/getSubtypeEventTables.Rd
man/integrateFunction.Rd
man/integrateTZ.Rd
man/makeCoverageDf.Rd
man/makeSaturationPlots.Rd
man/mapEntrez.Rd
man/mapHugo.Rd
man/mapScoresCnvBand.Rd
man/mergeData.Rd
man/mergeDataBySubtype.Rd
man/mergeGenomicSaturation.Rd
man/mergeLists.Rd
man/momaConstructor.Rd
man/mutSig.Rd
man/oncoprintPlot.Rd
man/pathwayDiggitIntersect.Rd
man/plotEvents.Rd
man/rea.Rd
man/reaNULL.Rd
man/sREA.Rd
man/sampleNameFilter.Rd
man/sampleOverlap.Rd
man/sigInteractorsDIGGIT.Rd
man/stoufferIntegrate.Rd
man/stoufferIntegrateDiggit.Rd
man/subsetListInteractions.Rd
man/validDiggitInteractions.Rd
man/viperGetSigTFS.Rd
man/viperGetTFScores.Rd
tests/testthat.R
tests/testthat/test-mapEntrez.R
vignettes/.gitignore
vignettes/moma.Rmd
