getDataFrame: Helper function to get data frame for bar plot plot.events...

In califano-lab/MOMA: Multi Omic Master Regulator Analysis

Description

Helper function to get data frame for bar plot plot.events function

Usage

getDataFrame(
  data,
  highlight.genes,
  genomeBand_2_gene,
  max.muts = 10,
  max.cnv = 5
)

Arguments

data	data.frame with $type, $id, $Freq per event
highlight.genes	genes to look for in mutations/cnv lists (if looking for specific genes because of prior knowledge)
genomeBand_2_gene	mapping of genomic location IDs to gene name: vector of HUGO gene ids, named by genomic loci
max.muts	maximum number of mutations to get per sample, default is 10
max.cnv	maximum number of cnvs to per sample, default is 5

Value

ordered data frame with each genomic event and it's frequency

califano-lab/MOMA documentation built on June 7, 2020, 7:17 a.m.