API for caravagn/revolver
REVOLVER - Repeated Evolution in Cancer
| Global functions | |
|---|---|
| .onLoad | Source code |
| CCF | Man page Source code |
| CCF_clusters | Man page Source code |
| CCF_parser | Man page Source code |
| Clonal_cluster | Man page Source code |
| Cluster | Man page Source code |
| DET_index | Man page Source code |
| Data | Man page Source code |
| Drivers | Man page Source code |
| ITransfer | Man page Source code |
| Jackknife_cluster_stability | Man page Source code |
| Jackknife_patient_coclustering | Man page Source code |
| Jackknife_trajectories_stability | Man page Source code |
| Phylo | Man page Source code |
| Samples | Man page Source code |
| Stats | Man page Source code |
| Stats_cohort | Man page Source code |
| Stats_drivers | Man page Source code |
| Stats_fits | Man page Source code |
| Stats_trees | Man page Source code |
| Subclonal | Man page Source code |
| Truncal | Man page Source code |
| analyse_jackknife | Source code |
| are_suitable_precomputed_trees | Source code |
| check_input | Source code |
| combination_of_information_transfer | Source code |
| compute_clone_trees | Man page Source code |
| compute_mutation_trees | Man page Source code |
| distinct_palette_few | Man page Source code |
| distinct_palette_many | Man page Source code |
| enrichment_test_incoming_edge | Source code |
| get_cluster_colors | Source code |
| get_duplicates | Source code |
| get_features | Man page Source code |
| gradient_palette | Man page Source code |
| has_clusters | Source code |
| has_fits | Source code |
| has_patient_trees | Source code |
| input_custom_trees | Man page Source code |
| my_ggplot_theme | Source code |
| obj_has_clusters | Source code |
| obj_has_evodistance | Source code |
| obj_has_fit | Source code |
| obj_has_jackknife | Source code |
| plot.rev_cohort | Man page Source code |
| plot.rev_cohort_fit | Man page Source code |
| plot_DET_index | Man page Source code |
| plot_clusters | Man page Source code |
| plot_dendrogram | Man page Source code |
| plot_drivers_clonality | Man page Source code |
| plot_drivers_graph | Man page Source code |
| plot_drivers_occurrence | Man page Source code |
| plot_jackknife_cluster_stability | Man page Source code |
| plot_jackknife_coclustering | Man page Source code |
| plot_jackknife_trajectories_stability | Man page Source code |
| plot_patient_CCF_histogram | Man page Source code |
| plot_patient_data | Man page Source code |
| plot_patient_mutation_burden | Man page Source code |
| plot_patient_oncoprint | Man page Source code |
| plot_patient_trees | Man page Source code |
| plot_patient_trees_scores | Man page Source code |
| plot_penalty | Man page Source code |
| plot_trajectories_per_cluster | Man page Source code |
| print.rev_cohort | Man page Source code |
| print.rev_cohort_fit | Man page Source code |
| remove_drivers | Man page Source code |
| remove_patients | Man page Source code |
| revolver_check_cohort | Man page Source code |
| revolver_cluster | Man page Source code |
| revolver_cohort | Man page Source code |
| revolver_fit | Man page Source code |
| revolver_jackknife | Man page Source code |
| split_dendrogram | Source code |
| stop_invalid_patient | Source code |
| stop_not_revolver_object | Source code |
| tl_revolver_fit | Source code |
| unpack | Source code |
