Man pages for carter-allen/IRISFGM
Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq
| AddMeta | AddMeta |
| BIC_LTMG | BIC_LTMG BIC_LTMG |
| BIC_ZIMG | BIC_ZIMG fits different model BIC_ZIMG fits different model |
| CalBinaryMultiSignal | CalBinaryMultiSignal |
| CalBinarySingleSignal | CalBinarySingleSignal |
| CLUSTERING | Packaging clustering method This function is used for... |
| CreateIRISFGMObject | CreateIRISFGMObject |
| DimReduce-class | Create DimReduce object |
| dot-generateNetObject | GenerateNetObject Generate Net Object for the network use. |
| dot-getBlock | getblock function |
| dot-IDConvert | convert ID convert ID |
| DotPlotPathway | DotPlotPathway |
| dot-runBiclusterBaseOnDiscretization | Run Discretization Generate temporal discretized file |
| dot-runBiclusterBaseOnLTMG | RunBicusterBaseOnLTMG |
| dot-RunGO | RunGO RunGO |
| dot-RunKEGG | RunKEGG RunKEGG |
| dot-separateBic | separateBic separate biclusters |
| FindClassBasedOnMC | FindClassBasedOnMC |
| FindGlobalMarkers | FindGlobalMarkers |
| FindMarker | FindMarker |
| Fit_LTMG | Fit_LTMG Fit_LTMG |
| GetBinaryMultiSignal | GetBinaryMultiSignal |
| GetBinarySingleSignal | GetBinarySingleSignal |
| GetLTMGmatrix | GetLTMGmatrix |
| Global_Zcut | Global_Zcut create Zcut Global_Zcut create Zcut |
| GRAPH | generate graph |
| InverseMillsRatio | Title Title |
| IRISFGM-class | IRISFGM |
| KS_LTMG | KS_LTMG KS_LTMG |
| KS_ZIMG | KS_ZIMG KS_ZIMG |
| LogSeparateKRpkmNew | Title Title |
| LogSeparateKRpkmNewLR | LogSeparateKRpkmNewLR |
| LTMG | LTMG LTMG |
| MCL | MCL clustering MCL clustering |
| MIN_return | MIN_return MIN_return |
| MINUS | MINUS MINUS |
| Pi_Zj_Zcut_new | Title Title |
| PlotDimension | PlotDimension |
| PlotHeatmap | PlotHeatmap |
| PlotMarkerHeatmap | PlotMarkerHeatmap will visualize global marker This function... |
| PlotMeta | PlotMeta |
| PlotModuleNetwork | PlotModuleNetwork |
| PlotNetwork | PlotNetwork |
| ProcessData | ProcessData |
| Pure_CDF | Pure_CDF Pure_CDF |
| qubic | qubic |
| ReadFrom10X_folder | ReadFrom10X_folder |
| ReadFrom10X_h5 | ReadFrom10X_h5 |
| RunBicluster | RunBicluster |
| RunClassification | RunClassification |
| RunDimensionReduction | RunDimensionReduction |
| RunDiscretization | RunDiscretization |
| RunLTMG | RunLTMG |
| RunPathway | RunPathway |
| SC | spectral Clustering method spectral Clustering method |
| SeparateKRpkmNew | Title Title |
| SeparateKRpkmNew2 | Title Title |
| SeparateKRpkmNewLR | SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes... |
| SeparateKRpkmNewLRPlus | SeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes... |
| SeparateKRpkmNewp | Title Title |
| State_return | State_return State_return |
| SubsetData | SubsetData |
