Files in carter-allen/IRISFGM
Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/AddMeta.R
R/Bicluster.R
R/Bric.R
R/CellTypePrediction.R
R/Classes.R
R/DifferentialGene.R
R/DimensionReducntionBasedOnLTMG.R
R/EnrichPathway.R
R/InputData.R
R/LTMG.R
R/LTMGSCA.R
R/Object.R
R/PlotHeatmap.R
R/PlotNetwork.R
R/PreprocessData.R
R/RcppExports.R
R/generics.R
README.md
man/AddMeta.Rd
man/BIC_LTMG.Rd
man/BIC_ZIMG.Rd
man/CLUSTERING.Rd
man/CalBinaryMultiSignal.Rd
man/CalBinarySingleSignal.Rd
man/CreateIRISFGMObject.Rd
man/DimReduce-class.Rd
man/DotPlotPathway.Rd
man/FindClassBasedOnMC.Rd
man/FindGlobalMarkers.Rd
man/FindMarker.Rd
man/Fit_LTMG.Rd
man/GRAPH.Rd
man/GetBinaryMultiSignal.Rd
man/GetBinarySingleSignal.Rd
man/GetLTMGmatrix.Rd
man/Global_Zcut.Rd
man/IRISFGM-class.Rd
man/InverseMillsRatio.Rd
man/KS_LTMG.Rd
man/KS_ZIMG.Rd
man/LTMG.Rd
man/LogSeparateKRpkmNew.Rd
man/LogSeparateKRpkmNewLR.Rd
man/MCL.Rd
man/MINUS.Rd
man/MIN_return.Rd
man/Pi_Zj_Zcut_new.Rd
man/PlotDimension.Rd
man/PlotHeatmap.Rd
man/PlotMarkerHeatmap.Rd
man/PlotMeta.Rd
man/PlotModuleNetwork.Rd
man/PlotNetwork.Rd
man/ProcessData.Rd
man/Pure_CDF.Rd
man/ReadFrom10X_folder.Rd
man/ReadFrom10X_h5.Rd
man/RunBicluster.Rd
man/RunClassification.Rd
man/RunDimensionReduction.Rd
man/RunDiscretization.Rd
man/RunLTMG.Rd
man/RunPathway.Rd
man/SC.Rd
man/SeparateKRpkmNew.Rd
man/SeparateKRpkmNew2.Rd
man/SeparateKRpkmNewLR.Rd
man/SeparateKRpkmNewLRPlus.Rd
man/SeparateKRpkmNewp.Rd
man/State_return.Rd
man/SubsetData.Rd
man/dot-IDConvert.Rd
man/dot-RunGO.Rd
man/dot-RunKEGG.Rd
man/dot-generateNetObject.Rd
man/dot-getBlock.Rd
man/dot-runBiclusterBaseOnDiscretization.Rd
man/dot-runBiclusterBaseOnLTMG.Rd
man/dot-separateBic.Rd
man/qubic.Rd
src/Makevars
src/RcppExports.cpp
src/cluster.cpp
src/cluster.h
src/expand.cpp
src/expand.h
src/get_options.cpp
src/get_options.h
src/getline.c
src/getline.h
src/main.cpp
src/main.h
src/make_graph.cpp
src/make_graph.h
src/rcpp_irisfgm.cpp
src/read_array.cpp
src/read_array.h
src/struct.cpp
src/struct.h
src/write_block.cpp
src/write_block.h
vignettes/IRISFGM_Rpackage.Rmd
