PlotMarkerHeatmap: PlotMarkerHeatmap will visualize global marker This function...

In carter-allen/IRISFGM: Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq

Description

PlotMarkerHeatmap will visualize global marker This function will generate global marker gene heatmap

Usage

PlotMarkerHeatmap(
  Globalmarkers = NULL,
  object = NULL,
  idents = NULL,
  top.gene = 50,
  p.adj = 0.05,
  scale = "row",
  label.size = 1
)

Arguments

Globalmarkers	output from FindGlobalMarkers
object	input IRISFGM object
idents	set current idents
top.gene	this number of genes will be used for generating heatmap
p.adj	adjusted pvalue cutoff for gene selection threshold
scale	character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is "row" if symm false, and "none" otherwise.
label.size	Number to decide label size

Value

heatmap

Examples

## Not run: 
markers <- FindGlobalMarkers(Global_marker,
object = object,
idents = "Seurat0.6",
top.gene = 50,
scale = "row")

## End(Not run)

carter-allen/IRISFGM documentation built on Dec. 31, 2020, 9:54 p.m.